PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g30170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 237aa    MW: 26142.7 Da    PI: 8.6898
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g30170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19102135235
       GATA   2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                +nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Tp2g30170 102 TNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 135
                6******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.7E-1495146IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-11102136No hitNo description
Gene3DG3DSA:3.30.50.109.2E-15102135IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.0E-17102135IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.018102131IPR000679Zinc finger, GATA-type
CDDcd002028.06E-12102132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTHGQYCDSC GGFPDHTQIC CFVDNGDGGF SNIQNVVVDC TLSLGTPSTR LSEKRRSNSS  60
SRVSKFLDTN KNSSKTSSCS VLPFSKRRIS GGGDTLLDRR YTNCDTTSTP LWRNGPRGPK  120
SLCNACGIRF KKEERRTTNP VVTVGNAVVE DQYGHHHSSS NATENGSSRC NYAAGEIRFI  180
HDYGGAGEYY RRDPVDGVNG VPFHSWRLNV ADTATSLVYD FTRRKDSNKG THKESNY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103517.11e-102PREDICTED: GATA transcription factor 18-like
RefseqXP_013651744.11e-102PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC797e-60GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A078I7W81e-102A0A078I7W8_BRANA; BnaA07g12520D protein
TrEMBLM4D6H11e-102M4D6H1_BRARP; Uncharacterized protein
STRINGBra012080.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1878778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-50GATA family protein